R/example_bootstrap_results.R
example_bootstrap_results.RdExample cell type enrichment results produced by bootstrap_enrichment_test.
example_bootstrap_results()
# Load the single cell data
ctd <- ewceData::ctd()
# Set the parameters for the analysis
# Use 3 bootstrap lists for speed, for publishable analysis use >=10,000
reps <- 3
# Load gene list from Alzheimer's disease GWAS
example_genelist <- ewceData::example_genelist()# Bootstrap significance test, no control for transcript length or GC content
full_results <- EWCE::bootstrap_enrichment_test(
sct_data = ctd,
hits = example_genelist,
reps = reps,
annotLevel = 1,
sctSpecies = "mouse",
genelistSpecies = "human"
)
bootstrap_results <- full_results
save(bootstrap_results,file = "inst/extdata/bootstrap_results.rda")
List with 3 items.
full_results <- EWCE::example_bootstrap_results()