Get percentage of target cell type hits

Source: R/check_percent_hits.R

After you run bootstrap_enrichment_test, check what percentage of significantly enriched cell types match an expected cell type.

check_percent_hits(
  boot_res,
  target_celltype,
  mtc_method = "bonferroni",
  q_threshold = 0.05,
  verbose = TRUE
)

Arguments

boot_res

bootstrap_enrichment_test results.
target_celltype

Substring to search to matching cell types (case-insensitive).
mtc_method

Multiple-testing correction method.
q_threshold

Corrected significance threshold.
verbose

Print messages.

Value

Report list.

Examples

full_results <- EWCE::example_bootstrap_results()
report <- EWCE::check_percent_hits(
    boot_res = full_results,
    target_celltype = "microglia"
)

#> 7 signficiant enrichment results @ bonferroni < 0.05
#> 14.3% of hits are of the target cell type.